PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_19098-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 322aa    MW: 35531.6 Da    PI: 7.0525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_19098-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09189229954
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r RR+ri +++  L++l+P       +K++ a++L +A++YIk L
  TRIUR3_19098-P1 189 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYIKFL 229
                      699*****************87.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.555180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-15185247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-14186239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-15186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-7190229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-6203234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010197Biological Processpolar nucleus fusion
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDNMTHNSSS SSSWDLDMSL DVALGRHHHP LLFDHPTPTP PAPPPPPLSF HLHPPPPPPP  60
HQHHQQHQQH QLAIDPSPSS SLFPPPPHHH PHHLHHLDLA VDPHRHHHDY QRDQHPDEMQ  120
QRPPPAMEEG SQQLHHQDAV DEAEEELGAM KEMMYRIAAM QPVDIDPATI KKPRRRNVRI  180
SEDPQSVAAR HRRERISERI RILQRLVPGG TKMDTASMLD EAIRYIKFLK RQVQDLQHQP  240
APPQQQHYPG GGGSGGAGPS STAAVAGRPA FLPLSAGSLI DWAGLTRQVD IHGPTSSSSS  300
SSMGGALGFG FSTGGQSSHG MH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444887.12e-83hypothetical protein SORBIDRAFT_07g000900
SwissprotO813131e-44IND_ARATH; Transcription factor IND
TrEMBLM8A0N40.0M8A0N4_TRIUA; Transcription factor IND
STRINGSb07g000900.17e-83(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90513246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.11e-36bHLH family protein